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1.
Dysbiosis exacerbates colitis by promoting ubiquitination and accumulation of the innate immune adaptor STING in myeloid cells.
Immunity
; 54(6): 1137-1153.e8, 2021 06 08.
Article
in English
| MEDLINE | ID: mdl-34051146
2.
Anaerobic Antibiotics and the Risk of Graft-versus-Host Disease after Allogeneic Hematopoietic Stem Cell Transplantation.
Biol Blood Marrow Transplant
; 26(11): 2053-2060, 2020 11.
Article
in English
| MEDLINE | ID: mdl-32682948
3.
Gut Colonization Preceding Mucosal Barrier Injury Bloodstream Infection in Pediatric Hematopoietic Stem Cell Transplantation Recipients.
Biol Blood Marrow Transplant
; 25(11): 2274-2280, 2019 11.
Article
in English
| MEDLINE | ID: mdl-31326608
4.
Strain-level microbial epidemiology and population genomics from shotgun metagenomics.
Nat Methods
; 13(5): 435-8, 2016 05.
Article
in English
| MEDLINE | ID: mdl-26999001
5.
Recovery of ethanol-induced Akkermansia muciniphila depletion ameliorates alcoholic liver disease.
Gut
; 67(5): 891-901, 2018 05.
Article
in English
| MEDLINE | ID: mdl-28550049
6.
Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota.
Environ Microbiol
; 18(7): 2196-213, 2016 07.
Article
in English
| MEDLINE | ID: mdl-26627180
7.
16S community profiling identifies proton pump inhibitor related differences in gastric, lung, and oropharyngeal microflora.
J Pediatr
; 166(4): 917-23, 2015 Apr.
Article
in English
| MEDLINE | ID: mdl-25661411
8.
Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence.
J Bacteriol
; 196(5): 920-30, 2014 Mar.
Article
in English
| MEDLINE | ID: mdl-24336939
9.
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.
Genome Res
; 21(3): 494-504, 2011 Mar.
Article
in English
| MEDLINE | ID: mdl-21212162
10.
Early empiric antibiotic use in preterm infants is associated with lower bacterial diversity and higher relative abundance of Enterobacter.
J Pediatr
; 165(1): 23-9, 2014 Jul.
Article
in English
| MEDLINE | ID: mdl-24529620
11.
The effects of antibiotic exposures on the gut resistome during hematopoietic cell transplantation in children.
Gut Microbes
; 16(1): 2333748, 2024.
Article
in English
| MEDLINE | ID: mdl-38555499
12.
Microbiota encoded fatty-acid metabolism expands tuft cells to protect tissues homeostasis during Clostridioides difficile infection in the large intestine.
bioRxiv
; 2024 Jan 31.
Article
in English
| MEDLINE | ID: mdl-38352546
13.
Serine/threonine phosphatase Stp1 contributes to reduced susceptibility to vancomycin and virulence in Staphylococcus aureus.
J Infect Dis
; 205(11): 1677-87, 2012 Jun.
Article
in English
| MEDLINE | ID: mdl-22492855
14.
Evolved bacterial resistance to the chemotherapy gemcitabine modulates its efficacy in co-cultured cancer cells.
Elife
; 122023 02 03.
Article
in English
| MEDLINE | ID: mdl-36734518
15.
The microbiota of pregnant women with SARS-CoV-2 and their infants.
Microbiome
; 11(1): 141, 2023 06 26.
Article
in English
| MEDLINE | ID: mdl-37365606
16.
The lncRNA HOXA11os regulates mitochondrial function in myeloid cells to maintain intestinal homeostasis.
Cell Metab
; 35(8): 1441-1456.e9, 2023 08 08.
Article
in English
| MEDLINE | ID: mdl-37494932
17.
The intestinal microbiota predicts COVID-19 severity and fatality regardless of hospital feeding method.
mSystems
; 8(4): e0031023, 2023 08 31.
Article
in English
| MEDLINE | ID: mdl-37548476
18.
Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung.
Proc Natl Acad Sci U S A
; 106(38): 16422-7, 2009 Sep 22.
Article
in English
| MEDLINE | ID: mdl-19805314
19.
The Urinary Microbiome of Older Adults Residing in a Nursing Home Varies With Duration of Residence and Shows Increases in Potential Pathogens.
J Gerontol A Biol Sci Med Sci
; 77(7): 1313-1320, 2022 07 05.
Article
in English
| MEDLINE | ID: mdl-34791238
20.
COVID-19 Variant Surveillance and Social Determinants in Central Massachusetts: Development Study.
JMIR Form Res
; 6(6): e37858, 2022 Jun 13.
Article
in English
| MEDLINE | ID: mdl-35658093